IL_9I5T_031

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCCCGAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_031 not in the Motif Atlas

Geometric match to IL_8B0X_098

Geometric discrepancy: 0.125

The information below is about IL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9I5T|1|A|U|1037
9I5T|1|A|C|1038
9I5T|1|A|C|1039
9I5T|1|A|C|1040
9I5T|1|A|G|1041
9I5T|1|A|A|1042
9I5T|1|A|A|1043
9I5T|1|A|A|1044
*
9I5T|1|A|U|1185
9I5T|1|A|A|1186

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20