IL_9I5T_037

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9I5T|1|A|A|1239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_037 not in the Motif Atlas

Geometric match to IL_4V9F_048

Geometric discrepancy: 0.0728

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9I5T|1|A|C|1236
9I5T|1|A|G|1237
9I5T|1|A|U|1238
9I5T|1|A|A|1239
9I5T|1|A|G|1240
9I5T|1|A|A|1241
9I5T|1|A|A|1242
9I5T|1|A|G|1243
*
9I5T|1|A|U|1263
9I5T|1|A|G|1264
9I5T|1|A|G|1265
9I5T|1|A|A|1266
9I5T|1|A|G|1267

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein bL20

Chain V

Large ribosomal subunit protein uL22