IL_9I5T_057

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5T_057 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.284

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9I5T|1|A|G|1859
9I5T|1|A|U|1860
9I5T|1|A|U|1861
9I5T|1|A|A|1862
9I5T|1|A|A|1863
9I5T|1|A|G|1864
*
9I5T|1|A|U|1897
9I5T|1|A|G|1898
9I5T|1|A|A|1899
9I5T|1|A|A|1900
9I5T|1|A|G|1901
9I5T|1|A|C|1902

Current chains

Chain A

23S rRNA

Nearby chains