IL_9I5V_116
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAG*CAUAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 9I5V|1|a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_116 not in the Motif Atlas
- Geometric match to IL_8B0X_034
- Geometric discrepancy: 0.1493
- The information below is about IL_8B0X_034
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9I5V|1|a|U|684
9I5V|1|a|G|685
9I5V|1|a|U|686
9I5V|1|a|A|687
9I5V|1|a|G|688
*
9I5V|1|a|C|699
9I5V|1|a|A|700
9I5V|1|a|U|701
9I5V|1|a|A|702
9I5V|1|a|G|703
9I5V|1|a|A|704
9I5V|1|a|U|705
9I5V|1|a|A|706
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- Small ribosomal subunit protein uS11
Coloring options: