IL_9I5V_130

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_130 not in the Motif Atlas

Geometric match to IL_4UYK_005

Geometric discrepancy: 0.221

The information below is about IL_4UYK_005

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9I5V|1|a|C|1257
9I5V|1|a|U|1258
9I5V|1|a|A|1259
9I5V|1|a|C|1260
*
9I5V|1|a|G|1271
9I5V|1|a|A|1272
9I5V|1|a|U|1273
9I5V|1|a|G|1274

Current chains

Chain a

16S rRNA

Nearby chains