IL_9I88_035
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UCCCAAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_035 not in the Motif Atlas
- Homologous match to IL_7A0S_034
- Geometric discrepancy: 0.1809
- The information below is about IL_7A0S_034
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.1
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
9I88|1|A|U|1048
9I88|1|A|C|1049
9I88|1|A|C|1050
9I88|1|A|C|1051
9I88|1|A|A|1052
9I88|1|A|A|1053
9I88|1|A|A|1054
9I88|1|A|A|1055
*
9I88|1|A|U|1194
9I88|1|A|A|1195
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL13
- Chain T
- Large ribosomal subunit protein bL20
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