IL_9I88_046

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9I88|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_046 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1711

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9I88|1|A|C|1246
9I88|1|A|G|1247
9I88|1|A|U|1248
9I88|1|A|U|1249
9I88|1|A|G|1250
9I88|1|A|A|1251
9I88|1|A|A|1252
9I88|1|A|G|1253
*
9I88|1|A|U|1272
9I88|1|A|G|1273
9I88|1|A|G|1274
9I88|1|A|A|1275
9I88|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein bL20