IL_9I88_112
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_112 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1297
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9I88|1|B|C|69
9I88|1|B|G|70
9I88|1|B|A|71
9I88|1|B|U|72
9I88|1|B|G|73
9I88|1|B|G|74
9I88|1|B|U|75
9I88|1|B|A|76
9I88|1|B|G|77
*
9I88|1|B|C|94
9I88|1|B|U|95
9I88|1|B|A|96
9I88|1|B|G|97
9I88|1|B|A|98
9I88|1|B|G|99
9I88|1|B|U|100
9I88|1|B|A|101
9I88|1|B|G|102
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- Large ribosomal subunit protein uL16
- Chain Y
- 50S ribosomal protein L25
- Chain Z
- Large ribosomal subunit protein bL27
Coloring options: