IL_9I88_142

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

9I88|1|a|A|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_142 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1692

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9I88|1|a|A|670
9I88|1|a|A|671
9I88|1|a|G|672
9I88|1|a|A|673
9I88|1|a|G|674
*
9I88|1|a|U|748
9I88|1|a|G|749
9I88|1|a|G|750
9I88|1|a|U|751

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein bS6

Chain p

Small ribosomal subunit protein uS15

Chain s

Small ribosomal subunit protein bS18