IL_9IOB_002

3D structure

PDB id

9IOB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the hexameric DRT9-ncRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGUGUG*UUAUAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOB_002 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.2752

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9IOB|1|D|G|20
9IOB|1|D|G|21
9IOB|1|D|U|22
9IOB|1|D|G|23
9IOB|1|D|U|24
9IOB|1|D|G|25
*
9IOB|1|D|U|135
9IOB|1|D|U|136
9IOB|1|D|A|137
9IOB|1|D|U|138
9IOB|1|D|A|139
9IOB|1|D|C|140

Current chains

Chain D

RNA (177-MER)

Nearby chains

Chain C

RNA-dependent DNA polymerase