IL_9JMK_014

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9JMK|1|A|G|801, 9JMK|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_014 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1693

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|G|674
9JMK|1|A|A|675
9JMK|1|A|A|676
9JMK|1|A|A|677
9JMK|1|A|C|678
*
9JMK|1|A|G|799
9JMK|1|A|A|800
9JMK|1|A|G|801
9JMK|1|A|A|802
9JMK|1|A|U|803
9JMK|1|A|A|804
9JMK|1|A|G|805
9JMK|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15