IL_9JMK_049

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9JMK|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_049 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1318

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|C|1686
9JMK|1|A|G|1687
9JMK|1|A|U|1688
9JMK|1|A|A|1689
9JMK|1|A|A|1690
9JMK|1|A|C|1691
*
9JMK|1|A|G|1696
9JMK|1|A|G|1697
9JMK|1|A|A|1698
9JMK|1|A|G|1699
9JMK|1|A|A|1700
9JMK|1|A|A|1701
9JMK|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2