IL_9KZU_035

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9KZU|1|L5|G|748, 9KZU|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|745
9KZU|1|L5|A|746
9KZU|1|L5|A|747
9KZU|1|L5|G|748
9KZU|1|L5|G|749
9KZU|1|L5|U|750
9KZU|1|L5|G|751
9KZU|1|L5|G|752
*
9KZU|1|L5|U|911
9KZU|1|L5|G|912
9KZU|1|L5|U|913
9KZU|1|L5|U|914
9KZU|1|L5|A|915
9KZU|1|L5|C|916
9KZU|1|L5|A|917
9KZU|1|L5|G|918
9KZU|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a