IL_9MKK_091

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_091 not in the Motif Atlas

Geometric match to IL_8P9A_327

Geometric discrepancy: 0.2086

The information below is about IL_8P9A_327

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9MKK|1|a|G|1038
9MKK|1|a|A|1039
9MKK|1|a|A|1040
9MKK|1|a|G|1041
*
9MKK|1|a|C|1114
9MKK|1|a|G|1115
9MKK|1|a|G|1116
9MKK|1|a|C|1117

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain u

Large ribosomal subunit protein bL25