IL_9MKK_119

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9MKK|1|a|A|1801, 9MKK|1|a|C|1816, 9MKK|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_119 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9MKK|1|a|U|1798
9MKK|1|a|G|1799
9MKK|1|a|C|1800
9MKK|1|a|A|1801
9MKK|1|a|A|1802
9MKK|1|a|A|1803
9MKK|1|a|C|1804
*
9MKK|1|a|G|1813
9MKK|1|a|G|1814
9MKK|1|a|A|1815
9MKK|1|a|C|1816
9MKK|1|a|G|1817
9MKK|1|a|U|1818
9MKK|1|a|A|1819
9MKK|1|a|U|1820
9MKK|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2