IL_9MKK_139

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9MKK|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_139 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.1188

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9MKK|1|a|C|2636
9MKK|1|a|U|2637
9MKK|1|a|G|2638
9MKK|1|a|A|2639
9MKK|1|a|G|2640
*
9MKK|1|a|C|2774
9MKK|1|a|G|2775
9MKK|1|a|A|2776
9MKK|1|a|G|2777
9MKK|1|a|A|2778
9MKK|1|a|U|2779
9MKK|1|a|G|2780
9MKK|1|a|A|2781
9MKK|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13