IL_9NJV_102
3D structure
- PDB id
- 9NJV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S initiation complex (bL33 absent)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9NJV|1|R1|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NJV_102 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1322
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9NJV|1|R1|C|2636
9NJV|1|R1|U|2637
9NJV|1|R1|G|2638
9NJV|1|R1|A|2639
9NJV|1|R1|G|2640
*
9NJV|1|R1|C|2774
9NJV|1|R1|G|2775
9NJV|1|R1|A|2776
9NJV|1|R1|G|2777
9NJV|1|R1|A|2778
9NJV|1|R1|U|2779
9NJV|1|R1|G|2780
9NJV|1|R1|A|2781
9NJV|1|R1|G|2782
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL13
- Chain 3
- 50S ribosomal protein L3
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