3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUUC*GGUAG
Length
10 nucleotides
Bulged bases
9NJV|1|R1|U|2689, 9NJV|1|R1|U|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NJV_105 not in the Motif Atlas
Homologous match to IL_5J7L_348
Geometric discrepancy: 0.1111
The information below is about IL_5J7L_348
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

9NJV|1|R1|U|2687
9NJV|1|R1|G|2688
9NJV|1|R1|U|2689
9NJV|1|R1|U|2690
9NJV|1|R1|C|2691
*
9NJV|1|R1|G|2718
9NJV|1|R1|G|2719
9NJV|1|R1|U|2720
9NJV|1|R1|A|2721
9NJV|1|R1|G|2722

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 17
Large ribosomal subunit protein bL17
Chain 19
50S ribosomal protein L19
Chain 3
50S ribosomal protein L3

Coloring options:


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