IL_9NO7_068

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

9NO7|1|A|G|1801, 9NO7|1|A|G|1816, 9NO7|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_068 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0699

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9NO7|1|A|U|1798
9NO7|1|A|G|1799
9NO7|1|A|C|1800
9NO7|1|A|G|1801
9NO7|1|A|A|1802
9NO7|1|A|A|1803
9NO7|1|A|C|1804
*
9NO7|1|A|G|1813
9NO7|1|A|G|1814
9NO7|1|A|A|1815
9NO7|1|A|G|1816
9NO7|1|A|G|1817
9NO7|1|A|U|1818
9NO7|1|A|A|1819
9NO7|1|A|U|1820
9NO7|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA