IL_9NO7_161

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

9NO7|1|a|5MC|1400, 9NO7|1|a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_161 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.0542

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9NO7|1|a|C|1399
9NO7|1|a|5MC|1400
9NO7|1|a|G|1401
*
9NO7|1|a|C|1501
9NO7|1|a|A|1502
9NO7|1|a|A|1503
9NO7|1|a|G|1504

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain v

CYS-Stop mRNA

Chain w

Peptide chain release factor 1

Chain x

Transfer RNA; tRNA