IL_9OFV_053

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9OFV|1|f|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_053 not in the Motif Atlas

Geometric match to IL_8P9A_283

Geometric discrepancy: 0.2107

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9OFV|1|f|G|1234
9OFV|1|f|U|1235
9OFV|1|f|G|1236
9OFV|1|f|G|1237
9OFV|1|f|C|1238
*
9OFV|1|f|G|1250
9OFV|1|f|A|1251
9OFV|1|f|A|1252
9OFV|1|f|U|1253
9OFV|1|f|C|1254

Current chains

Chain f

25S rRNA

Nearby chains

Chain 0

60S acidic ribosomal protein P0

Chain z

Large ribosomal subunit protein uL11A