IL_9OFV_100
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_100 not in the Motif Atlas
- Geometric match to IL_8P9A_327
- Geometric discrepancy: 0.0964
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9OFV|1|f|U|2718
9OFV|1|f|U|2719
9OFV|1|f|G|2720
9OFV|1|f|A|2721
*
9OFV|1|f|U|2735
9OFV|1|f|A|2736
9OFV|1|f|C|2737
9OFV|1|f|A|2738
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 4
- 60S ribosomal protein L18-A
- Chain 7
- 60S ribosomal protein L21-A
- Chain O
- Large ribosomal subunit protein eL29
- Chain b
- 60S ribosomal protein L42-A
- Chain m
- Large ribosomal subunit protein uL18
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