IL_9OFV_118

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

9OFV|1|f|U|3056, 9OFV|1|f|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_118 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.0723

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|U|3054
9OFV|1|f|U|3055
9OFV|1|f|U|3056
9OFV|1|f|U|3057
9OFV|1|f|U|3058
9OFV|1|f|G|3059
*
9OFV|1|f|C|3084
9OFV|1|f|G|3085
9OFV|1|f|A|3086
9OFV|1|f|A|3087
9OFV|1|f|G|3088

Current chains

Chain f

25S rRNA

Nearby chains

Chain 9

Large ribosomal subunit protein eL24A

Chain Q

60S ribosomal protein L31-A

Chain k

Large ribosomal subunit protein uL3