IL_9P8I_113

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9P8I|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|C|2867
9P8I|1|L5|G|2868
9P8I|1|L5|U|2869
9P8I|1|L5|A|2870
9P8I|1|L5|A|2871
9P8I|1|L5|C|2872
*
9P8I|1|L5|G|2877
9P8I|1|L5|G|2878
9P8I|1|L5|A|2879
9P8I|1|L5|U|2880
9P8I|1|L5|A|2881
9P8I|1|L5|A|2882
9P8I|1|L5|G|2883

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA