IL_9PJ7_124

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGA*UGUAC

Length

9 nucleotides

Bulged bases

9PJ7|1|a|U|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_124 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.2224

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9PJ7|1|a|G|1612
9PJ7|1|a|U|1613
9PJ7|1|a|G|1614
9PJ7|1|a|A|1615
*
9PJ7|1|a|U|1740
9PJ7|1|a|G|1741
9PJ7|1|a|U|1742
9PJ7|1|a|A|1743
9PJ7|1|a|C|1744

Current chains

Chain a

23S rRNA

Nearby chains