IL_9PJ7_155

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAG*UGGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PJ7_155 not in the Motif Atlas

Homologous match to IL_7A0S_080

Geometric discrepancy: 0.4847

The information below is about IL_7A0S_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

9PJ7|1|a|C|2479
9PJ7|1|a|A|2480
9PJ7|1|a|G|2481
*
9PJ7|1|a|U|2499
9PJ7|1|a|G|2500
9PJ7|1|a|G|2501
9PJ7|1|a|U|2502
9PJ7|1|a|G|2503

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L5

Chain n

50S ribosomal protein L18