IL_9QEG_035

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9QEG|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0499

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9QEG|1|A|U|1062
9QEG|1|A|U|1063
9QEG|1|A|A|1064
9QEG|1|A|A|1065
9QEG|1|A|G|1066
9QEG|1|A|U|1067
9QEG|1|A|G|1068
*
9QEG|1|A|C|1184
9QEG|1|A|U|1185
9QEG|1|A|A|1186
9QEG|1|A|A|1187
9QEG|1|A|A|1188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain H

Large ribosomal subunit protein uL13