IL_9QEG_037

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9QEG|1|A|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_037 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0694

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9QEG|1|A|G|1075
9QEG|1|A|A|1076
9QEG|1|A|U|1077
9QEG|1|A|G|1078
*
9QEG|1|A|C|1165
9QEG|1|A|G|1166
9QEG|1|A|C|1167

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain K

Large ribosomal subunit protein uL16