IL_9QEG_059

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

9QEG|1|A|U|1828, 9QEG|1|A|U|1843, 9QEG|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_059 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9QEG|1|A|U|1825
9QEG|1|A|G|1826
9QEG|1|A|C|1827
9QEG|1|A|U|1828
9QEG|1|A|A|1829
9QEG|1|A|A|1830
9QEG|1|A|A|1831
*
9QEG|1|A|U|1840
9QEG|1|A|G|1841
9QEG|1|A|A|1842
9QEG|1|A|U|1843
9QEG|1|A|G|1844
9QEG|1|A|U|1845
9QEG|1|A|A|1846
9QEG|1|A|U|1847
9QEG|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2