IL_9QEG_104

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAUUAG*CAACGAUG

Length

14 nucleotides

Bulged bases

9QEG|1|Aa|U|252, 9QEG|1|Aa|C|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_104 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1288

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9QEG|1|Aa|C|250
9QEG|1|Aa|A|251
9QEG|1|Aa|U|252
9QEG|1|Aa|U|253
9QEG|1|Aa|A|254
9QEG|1|Aa|G|255
*
9QEG|1|Aa|C|285
9QEG|1|Aa|A|286
9QEG|1|Aa|A|287
9QEG|1|Aa|C|288
9QEG|1|Aa|G|289
9QEG|1|Aa|A|290
9QEG|1|Aa|U|291
9QEG|1|Aa|G|292

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

Small ribosomal subunit protein uS12

Chain Aq

Small ribosomal subunit protein uS17