IL_9QEG_119

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGAAAGCC*GAGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_119 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.2241

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9QEG|1|Aa|U|613
9QEG|1|Aa|G|614
9QEG|1|Aa|A|615
9QEG|1|Aa|A|616
9QEG|1|Aa|A|617
9QEG|1|Aa|G|618
9QEG|1|Aa|C|619
9QEG|1|Aa|C|620
*
9QEG|1|Aa|G|636
9QEG|1|Aa|A|637
9QEG|1|Aa|G|638
9QEG|1|Aa|G|639
9QEG|1|Aa|G|640

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

Small ribosomal subunit protein uS4

Chain Ap

Small ribosomal subunit protein bS16