IL_9QEG_124

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGUAG*CGCAGAGA

Length

13 nucleotides

Bulged bases

9QEG|1|Aa|A|710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_124 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1616

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9QEG|1|Aa|U|692
9QEG|1|Aa|G|693
9QEG|1|Aa|U|694
9QEG|1|Aa|A|695
9QEG|1|Aa|G|696
*
9QEG|1|Aa|C|707
9QEG|1|Aa|G|708
9QEG|1|Aa|C|709
9QEG|1|Aa|A|710
9QEG|1|Aa|G|711
9QEG|1|Aa|A|712
9QEG|1|Aa|G|713
9QEG|1|Aa|A|714

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Ak

Small ribosomal subunit protein uS11