IL_9QEG_127

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_127 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0726

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9QEG|1|Aa|G|896
9QEG|1|Aa|G|897
9QEG|1|Aa|A|898
9QEG|1|Aa|G|899
9QEG|1|Aa|U|900
9QEG|1|Aa|A|901
9QEG|1|Aa|C|902
9QEG|1|Aa|G|903
*
9QEG|1|Aa|U|914
9QEG|1|Aa|G|915
9QEG|1|Aa|A|916
9QEG|1|Aa|A|917
9QEG|1|Aa|A|918
9QEG|1|Aa|C|919

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

Small ribosomal subunit protein uS12