3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
9QIW|1|L5|G|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_064 not in the Motif Atlas
Homologous match to IL_8P9A_283
Geometric discrepancy: 0.1965
The information below is about IL_8P9A_283
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_16218.3
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

9QIW|1|L5|G|1973
9QIW|1|L5|U|1974
9QIW|1|L5|G|1975
9QIW|1|L5|G|1976
9QIW|1|L5|C|1977
*
9QIW|1|L5|G|1989
9QIW|1|L5|A|1990
9QIW|1|L5|A|1991
9QIW|1|L5|U|1992
9QIW|1|L5|C|1993

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CB
Nucleolar GTP-binding protein 2
Chain CF
mRNA turnover protein 4 homolog
Chain CG
Notchless protein homolog 1
Chain CH
Ribosome biogenesis protein NSA2 homolog
Chain Lt
Large ribosomal subunit protein uL11

Coloring options:


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