3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
9QIW|1|L5|U|2305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_069 not in the Motif Atlas
Homologous match to IL_8P9A_287
Geometric discrepancy: 0.1331
The information below is about IL_8P9A_287
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90775.1
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
23

Unit IDs

9QIW|1|L5|C|2302
9QIW|1|L5|C|2303
9QIW|1|L5|U|2304
9QIW|1|L5|U|2305
9QIW|1|L5|G|2306
9QIW|1|L5|A|2307
9QIW|1|L5|A|2308
9QIW|1|L5|G|2309
*
9QIW|1|L5|U|2329
9QIW|1|L5|G|2330
9QIW|1|L5|G|2331
9QIW|1|L5|A|2332
9QIW|1|L5|G|2333

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
60S ribosomal protein L4
Chain LP
60S ribosomal protein L17
Chain LY
60S ribosomal protein L26
Chain Le
60S ribosomal protein L32

Coloring options:


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