3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGUAUG*CGAAG
Length
11 nucleotides
Bulged bases
9QIW|1|L5|U|4634, 9QIW|1|L5|U|4636
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_119 not in the Motif Atlas
Homologous match to IL_8P9A_346
Geometric discrepancy: 0.1967
The information below is about IL_8P9A_346
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_98200.1
Basepair signature
cWW-L-R-tHW-L-cWW
Number of instances in this motif group
3

Unit IDs

9QIW|1|L5|U|4632
9QIW|1|L5|G|4633
9QIW|1|L5|U|4634
9QIW|1|L5|A|4635
9QIW|1|L5|U|4636
9QIW|1|L5|G|4637
*
9QIW|1|L5|C|4662
9QIW|1|L5|G|4663
9QIW|1|L5|A|4664
9QIW|1|L5|A|4665
9QIW|1|L5|G|4666

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CI
Probable ribosome biogenesis protein RLP24
Chain LB
60S ribosomal protein L3
Chain Ld
60S ribosomal protein L31

Coloring options:


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