3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GAGC*GAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_124 not in the Motif Atlas
Geometric match to IL_8CRE_440
Geometric discrepancy: 0.2313
The information below is about IL_8CRE_440
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9QIW|1|L5|G|4743
9QIW|1|L5|A|4744
9QIW|1|L5|G|4745
9QIW|1|L5|C|4746
*
9QIW|1|L5|G|4954
9QIW|1|L5|A|4955
9QIW|1|L5|A|4956
9QIW|1|L5|C|4957

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:


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