IL_9QJC_008
3D structure
- PDB id
- 9QJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast pre-60S Domain II intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- 9QJC|1|1|U|681, 9QJC|1|1|U|682
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QJC_008 not in the Motif Atlas
- Homologous match to IL_9AXU_021
- Geometric discrepancy: 0.4572
- The information below is about IL_9AXU_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87030.3
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9QJC|1|1|G|680
9QJC|1|1|U|681
9QJC|1|1|U|682
9QJC|1|1|U|683
9QJC|1|1|G|684
*
9QJC|1|1|C|696
9QJC|1|1|A|697
9QJC|1|1|U|698
9QJC|1|1|A|699
9QJC|1|1|C|700
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
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