IL_9QQA_028

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_028 not in the Motif Atlas

Geometric match to IL_8CRE_421

Geometric discrepancy: 0.113

The information below is about IL_8CRE_421

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9QQA|1|A2|A|600
9QQA|1|A2|G|601
9QQA|1|A2|OMG|602
9QQA|1|A2|G|603
9QQA|1|A2|C|604
9QQA|1|A2|A|605
9QQA|1|A2|A|606
9QQA|1|A2|G|607
*
9QQA|1|A2|C|637
9QQA|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ab

40S ribosomal protein S2

Chain Ai

Small ribosomal subunit protein uS4