IL_9QQA_084

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_084 not in the Motif Atlas

Geometric match to IL_8CRE_471

Geometric discrepancy: 0.1059

The information below is about IL_8CRE_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9QQA|1|A2|C|1718
9QQA|1|A2|G|1719
9QQA|1|A2|A|1720
9QQA|1|A2|U|1721
*
9QQA|1|A2|A|1814
9QQA|1|A2|G|1815
9QQA|1|A2|A|1816
9QQA|1|A2|G|1817

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Az

Small ribosomal subunit protein eS32

Chain B5

Large subunit ribosomal RNA; LSU rRNA