IL_9QQA_161

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9QQA|1|B5|G|1680

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_161 not in the Motif Atlas

Geometric match to IL_8CRE_043

Geometric discrepancy: 0.1499

The information below is about IL_8CRE_043

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9QQA|1|B5|G|1678
9QQA|1|B5|C|1679
9QQA|1|B5|G|1680
9QQA|1|B5|A|1681
9QQA|1|B5|A|1682
9QQA|1|B5|PSU|1683
*
9QQA|1|B5|A|1725
9QQA|1|B5|A|1726
9QQA|1|B5|A|1727
9QQA|1|B5|C|1728

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BI

60S ribosomal protein L10

Chain BT

60S ribosomal protein L21