IL_9QQA_201

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_201 not in the Motif Atlas

Geometric match to IL_8CRE_082

Geometric discrepancy: 0.0994

The information below is about IL_8CRE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9QQA|1|B5|G|2690
9QQA|1|B5|G|2691
9QQA|1|B5|A|2692
9QQA|1|B5|A|2693
9QQA|1|B5|G|2694
9QQA|1|B5|U|2695
9QQA|1|B5|C|2696
9QQA|1|B5|G|2697
9QQA|1|B5|G|2698
*
9QQA|1|B5|C|3569
9QQA|1|B5|U|3570
9QQA|1|B5|G|3571
9QQA|1|B5|U|3572
9QQA|1|B5|OMC|3573

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23