IL_9QQA_251

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQA_251 not in the Motif Atlas

Geometric match to IL_8CRE_440

Geometric discrepancy: 0.2147

The information below is about IL_8CRE_440

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9QQA|1|B5|G|4490
9QQA|1|B5|A|4491
9QQA|1|B5|G|4492
9QQA|1|B5|C|4493
*
9QQA|1|B5|G|4693
9QQA|1|B5|A|4694
9QQA|1|B5|A|4695
9QQA|1|B5|C|4696

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bf

60S ribosomal protein L35a