IL_9QQB_052
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQB_052 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3724
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9QQB|1|A2|C|1099
9QQB|1|A2|G|1100
9QQB|1|A2|A|1101
9QQB|1|A2|U|1102
9QQB|1|A2|G|1103
9QQB|1|A2|C|1104
*
9QQB|1|A2|G|1130
9QQB|1|A2|G|1131
9QQB|1|A2|G|1132
9QQB|1|A2|C|1133
9QQB|1|A2|A|1134
9QQB|1|A2|G|1135
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- Small ribosomal subunit protein eS27
- Chain AE
- eS26
- Chain AZ
- Small ribosomal subunit protein uS2
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- Small ribosomal subunit protein uS15
- Chain Aq
- Small ribosomal subunit protein eS17
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