IL_9QQB_110
3D structure
- PDB id
- 9QQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex of a translating ribosome, NAC, NMT1, and NatA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.43 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 9QQB|1|B5|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQB_110 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.266
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_55206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9QQB|1|B5|C|339
9QQB|1|B5|C|340
9QQB|1|B5|G|341
9QQB|1|B5|G|342
*
9QQB|1|B8|C|32
9QQB|1|B8|G|33
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Bj
- Ribosomal protein L37
Coloring options: