IL_9QQB_165

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

AUUA*(PSU)(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_165 not in the Motif Atlas

Geometric match to IL_8CRE_044

Geometric discrepancy: 0.1542

The information below is about IL_8CRE_044

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9QQB|1|B5|A|1685
9QQB|1|B5|U|1686
9QQB|1|B5|U|1687
9QQB|1|B5|A|1688
*
9QQB|1|B5|PSU|1720
9QQB|1|B5|PSU|1721
9QQB|1|B5|C|1722
9QQB|1|B5|U|1723

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Large ribosomal subunit protein uL18

Chain BI

60S ribosomal protein L10