IL_9QQB_179

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9QQB|1|B5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_179 not in the Motif Atlas

Geometric match to IL_8P9A_283

Geometric discrepancy: 0.3057

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

9QQB|1|B5|G|1912
9QQB|1|B5|U|1913
9QQB|1|B5|G|1914
9QQB|1|B5|G|1915
9QQB|1|B5|C|1916
*
9QQB|1|B5|G|1928
9QQB|1|B5|A|1929
9QQB|1|B5|A|1930
9QQB|1|B5|U|1931
9QQB|1|B5|C|1932

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

Large ribosomal subunit protein uL10

Chain Bt

60S ribosomal protein L12