IL_9QQB_249

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

9QQB|1|B5|U|4380, 9QQB|1|B5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQB_249 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.204

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

9QQB|1|B5|U|4378
9QQB|1|B5|G|4379
9QQB|1|B5|U|4380
9QQB|1|B5|A|4381
9QQB|1|B5|PSU|4382
9QQB|1|B5|OMG|4383
*
9QQB|1|B5|C|4408
9QQB|1|B5|G|4409
9QQB|1|B5|A|4410
9QQB|1|B5|A|4411
9QQB|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31