IL_9R9O_132

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9R9O|1|C2|U|45, 9R9O|1|C2|A|46, 9R9O|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_132 not in the Motif Atlas

Geometric match to IL_8GLP_191

Geometric discrepancy: 0.1242

The information below is about IL_8GLP_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.5

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9R9O|1|C2|G|42
9R9O|1|C2|A|43
9R9O|1|C2|U|44
9R9O|1|C2|U|45
9R9O|1|C2|A|46
9R9O|1|C2|A|47
9R9O|1|C2|G|48
*
9R9O|1|C2|C|431
9R9O|1|C2|G|432
9R9O|1|C2|C|433

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23-A