IL_9R9O_142

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

9R9O|1|C2|U|260, 9R9O|1|C2|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9O_142 not in the Motif Atlas

Homologous match to IL_9PN5_154

Geometric discrepancy: 0.5002

The information below is about IL_9PN5_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9R9O|1|C2|G|204
9R9O|1|C2|U|205
9R9O|1|C2|A|206
*
9R9O|1|C2|U|259
9R9O|1|C2|U|260
9R9O|1|C2|U|261
9R9O|1|C2|U|262
9R9O|1|C2|C|263

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SI

40S ribosomal protein S8-A